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» Hardware Acceleration of HMMER on FPGAs
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ARC
2010
Springer
188views Hardware» more  ARC 2010»
14 years 2 months ago
A Fused Hybrid Floating-Point and Fixed-Point Dot-Product for FPGAs
Dot-products are one of the essential and recurrent building blocks in scientific computing, and often take-up a large proportion of the scientific acceleration circuitry. The ac...
Antonio Roldao Lopes, George A. Constantinides
ASAP
2008
IEEE
186views Hardware» more  ASAP 2008»
14 years 2 months ago
Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs
RNA structure prediction, or folding, is a computeintensive task that lies at the core of several search applications in bioinformatics. We begin to address the need for high-thro...
Arpith C. Jacob, Jeremy Buhler, Roger D. Chamberla...
VLSISP
2011
358views Database» more  VLSISP 2011»
13 years 2 months ago
Accelerating Machine-Learning Algorithms on FPGAs using Pattern-Based Decomposition
Machine-learning algorithms are employed in a wide variety of applications to extract useful information from data sets, and many are known to suffer from superlinear increases in ...
Karthik Nagarajan, Brian Holland, Alan D. George, ...
IPPS
2006
IEEE
14 years 1 months ago
Accelerating DTI tractography using FPGAs
Diffusion Tensor Imaging (DTI) tractography in Magnetic Resonance Imaging (MRI) is a computationally intensive procedure, requiring on the order of tens of minutes to complete tr...
Kwatra Kwatra, Viktor K. Prasanna, Mitali Singh
FCCM
2009
IEEE
171views VLSI» more  FCCM 2009»
14 years 2 months ago
Accelerating SPICE Model-Evaluation using FPGAs
—Single-FPGA spatial implementations can provide an order of magnitude speedup over sequential microprocessor implementations for data-parallel, floating-point computation in SP...
Nachiket Kapre, André DeHon