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» Hardware-Accelerated RNA Secondary-Structure Alignment
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BMCBI
2006
121views more  BMCBI 2006»
13 years 7 months ago
Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using
Background: Availability of high-resolution RNA crystal structures for the 30S and 50S ribosomal subunits and the subsequent validation of comparative secondary structure models h...
Yadhu Kumar, Ralf Westram, Peter Kipfer, Harald Me...
ISAAC
2004
Springer
125views Algorithms» more  ISAAC 2004»
14 years 25 days ago
Local Gapped Subforest Alignment and Its Application in Finding RNA Structural Motifs
RNA molecules whose secondary structures contain similar substructures often have similar functions. Therefore, an important task in the study of RNA is to develop methods for disc...
Jesper Jansson, Ngo Trung Hieu, Wing-Kin Sung
IPPS
2007
IEEE
14 years 1 months ago
RNAVLab: A unified environment for computational RNA structure analysis based on grid computing technology
Ribonucleic acid (RNA) molecules play important roles in many biological processes including gene expression and regulation. An RNA molecule is a linear polymer which folds back o...
Michela Taufer, Ming-Ying Leung, Kyle L. Johnson, ...
NAR
1998
104views more  NAR 1998»
13 years 7 months ago
The ribonuclease P database
Ribonuclease P is the endoribonuclease responsible for the removal of leader sequences from tRNA precursors. Ribonuclease P is a ribonucleoprotein, and in bacteria the RNA alone i...
James W. Brown
BMCBI
2005
162views more  BMCBI 2005»
13 years 7 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes