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162
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BMCBI
2005
148views more  BMCBI 2005»
15 years 3 months ago
NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans
Background: NemaFootPrinter (Nematode Transcription Factor Scan Through Philogenetic Footprinting) is a web-based software for interactive identification of conserved, non-exonic ...
Davide Rambaldi, Alessandro Guffanti, Paolo Morand...
124
Voted
ICPR
2010
IEEE
15 years 7 months ago
Normalized Sum-Over-Paths Edit Distances
Abstract--In this paper, normalized SoP string-edit distances, taking into account all possible alignments between two sequences, are investigated. These normalized distances are v...
Silvia García, François Fouss, Masashi Shimbo, M...
SYRCODIS
2008
95views Database» more  SYRCODIS 2008»
15 years 5 months ago
The Framework for Study Of Caching Algorithm Efficiency
In this paper we offer several models of reference sequences (traces of references) using Markov chains for testing of the replacement policies in caching systems. These models en...
Michael V. Grankov, Ngo Thanh Hung, Mosab Bassam Y...
133
Voted
BMCBI
2010
124views more  BMCBI 2010»
15 years 3 months ago
Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated
Background: Large datasets of protein interactions provide a rich resource for the discovery of Short Linear Motifs (SLiMs) that recur in unrelated proteins. However, existing met...
Norman E. Davey, Richard J. Edwards, Denis C. Shie...
110
Voted
BMCBI
2007
123views more  BMCBI 2007»
15 years 3 months ago
Tracembler - software for in-silico chromosome walking in unassembled genomes
Background: Whole genome shotgun sequencing produces increasingly higher coverage of a genome with random sequence reads. Progressive whole genome assembly and eventual finishing ...
Qunfeng Dong, Matthew D. Wilkerson, Volker Brendel