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BMCBI
2006
92views more  BMCBI 2006»
13 years 9 months ago
Recrafting the neighbor-joining method
Background: The neighbor-joining method by Saitou and Nei is a widely used method for constructing phylogenetic trees. The formulation of the method gives rise to a canonical (n3)...
Thomas Mailund, Gerth Stølting Brodal, Rolf...
BMCBI
2005
94views more  BMCBI 2005»
13 years 9 months ago
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities
Background: A number of algorithms for steady state analysis of metabolic networks have been developed over the years. Of these, Elementary Mode Analysis (EMA) has proven especial...
Roland Schwarz, Patrick Musch, Axel von Kamp, Bern...
GECCO
2007
Springer
151views Optimization» more  GECCO 2007»
14 years 4 months ago
Solving real-valued optimisation problems using cartesian genetic programming
Classical Evolutionary Programming (CEP) and Fast Evolutionary Programming (FEP) have been applied to realvalued function optimisation. Both of these techniques directly evolve th...
James Alfred Walker, Julian Francis Miller
GECCO
2007
Springer
241views Optimization» more  GECCO 2007»
14 years 4 months ago
Binary ant algorithm
When facing dynamic optimization problems the goal is no longer to find the extrema, but to track their progression through the space as closely as possible. Over these kind of ov...
Carlos Fernandes, Agostinho C. Rosa, Vitorino Ramo...
CEC
2008
IEEE
14 years 4 months ago
Differential evolution particle swarm optimization for digital filter design
— In this paper, swarm and evolutionary algorithms have been applied for the design of digital filters. Particle swarm optimization (PSO) and differential evolution particle swar...
Bipul Luitel, Ganesh K. Venayagamoorthy