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» Heuristics for the Phylogeny Problem
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BMCBI
2010
117views more  BMCBI 2010»
13 years 7 months ago
Using jackknife to assess the quality of gene order phylogenies
Background: In recent years, gene order data has attracted increasing attention from both biologists and computer scientists as a new type of data for phylogenetic analysis. If ge...
Jian Shi, Yiwei Zhang, Haiwei Luo, Jijun Tang
HEURISTICS
2010
13 years 5 months ago
Alternating control tree search for knapsack/covering problems
Lars Magnus Hvattum, Halvard Arntzen, Arne L&oslas...
JAMDS
2002
155views more  JAMDS 2002»
13 years 7 months ago
A new heuristic for the quadratic assignment problem
We propose a new heuristic for the solution of the quadratic assignment problem. The heuristic combines ideas from tabu search and genetic algorithms. Run times are very short comp...
Zvi Drezner
NAR
2006
120views more  NAR 2006»
13 years 7 months ago
TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure
Phylogenetic analysis and examination of protein domains allow accurate genome annotation and are invaluable to study proteins and protein complex evolution. However, two sequence...
Blaise T. F. Alako, Daphne Rainey, Harm Nijveen, J...
COCOON
2009
Springer
14 years 2 months ago
On the Generalised Character Compatibility Problem for Non-branching Character Trees
In [3], the authors introduced the Generalised Character Compatibility Problem as a generalisation of the Perfect Phylogeny Problem for a set of species. This generalised problem t...
Ján Manuch, Murray Patterson, Arvind Gupta