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BMCBI
2005
114views more  BMCBI 2005»
13 years 8 months ago
A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins
Background: Structure prediction of membrane proteins is still a challenging computational problem. Hidden Markov models (HMM) have been successfully applied to the problem of pre...
Piero Fariselli, Pier Luigi Martelli, Rita Casadio
TSP
2008
106views more  TSP 2008»
13 years 8 months ago
An EM Algorithm for Ion-Channel Current Estimation
Parameter estimation of a continuous-time Markov chain observed through a discrete-time memoryless channel is studied. An expectation-maximization (EM) algorithm for maximum likeli...
William J. J. Roberts, Yariv Ephraim
BMCBI
2010
99views more  BMCBI 2010»
13 years 8 months ago
Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM)
Background: It has been apparent in the last few years that small non coding RNAs (ncRNA) play a very significant role in biological regulation. Among these microRNAs (miRNAs), 22...
Sumeet Agarwal, Candida Vaz, Alok Bhattacharya, As...
NIPS
1994
13 years 10 months ago
An Input Output HMM Architecture
We introduce a recurrent architecture having a modular structure and we formulate a training procedure based on the EM algorithm. The resulting model has similarities to hidden Ma...
Yoshua Bengio, Paolo Frasconi
ICIP
2005
IEEE
14 years 10 months ago
Segmenting non stationary images with triplet Markov fields
The hidden Markov field (HMF) model has been used in many model-based solutions to image analysis problems, including that of image segmentation, and generally gives satisfying re...
Dalila Benboudjema, Wojciech Pieczynski