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BMCBI
2010
143views more  BMCBI 2010»
13 years 9 months ago
An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location inf
Background: Graph drawing is one of the important techniques for understanding biological regulations in a cell or among cells at the pathway level. Among many available layout al...
Kaname Kojima, Masao Nagasaki, Satoru Miyano
BMCBI
2010
142views more  BMCBI 2010»
13 years 9 months ago
Discover Protein Complexes in Protein-Protein Interaction Networks Using Parametric Local Modularity
Background: Recent advances in proteomic technologies have enabled us to create detailed protein-protein interaction maps in multiple species and in both normal and diseased cells...
Jongkwang Kim, Kai Tan
BMCBI
2007
162views more  BMCBI 2007»
13 years 9 months ago
Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
Namshin Kim, Christopher Lee
CORR
2010
Springer
160views Education» more  CORR 2010»
13 years 9 months ago
New Results on Quantum Property Testing
We present several new examples of speed-ups obtainable by quantum algorithms in the context of property testing. First, motivated by sampling algorithms, we consider probability d...
Sourav Chakraborty, Eldar Fischer, Arie Matsliah, ...
CORR
2010
Springer
190views Education» more  CORR 2010»
13 years 9 months ago
Overlap properties of geometric expanders
The overlap number of a finite (d + 1)-uniform hypergraph H is the largest constant c(H) (0, 1] such that no matter how we map the vertices of H into Rd , there is a point covered...
Jacob Fox, Mikhail Gromov, Vincent Lafforgue, Assa...