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» High Performance Database Searching with HMMer on FPGAs
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EDBT
2009
ACM
277views Database» more  EDBT 2009»
14 years 18 days ago
G-hash: towards fast kernel-based similarity search in large graph databases
Structured data including sets, sequences, trees and graphs, pose significant challenges to fundamental aspects of data management such as efficient storage, indexing, and simila...
Xiaohong Wang, Aaron M. Smalter, Jun Huan, Gerald ...
BMCBI
2007
166views more  BMCBI 2007»
13 years 8 months ago
Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics
Background: In proteomic analysis, MS/MS spectra acquired by mass spectrometer are assigned to peptides by database searching algorithms such as SEQUEST. The assignations of pepti...
Xinning Jiang, Xiaogang Jiang, Guanghui Han, Mingl...
CIKM
2009
Springer
14 years 2 months ago
Structure-aware indexing for keyword search in databases
Most of existing methods of keyword search over relational databases find the Steiner trees composed of relevant tuples as the answers. They identify the Steiner trees by discove...
Guoliang Li, Jianhua Feng, Jianyong Wang
ICDE
2012
IEEE
191views Database» more  ICDE 2012»
11 years 10 months ago
DESKS: Direction-Aware Spatial Keyword Search
— Location-based services (LBS) have been widely accepted by mobile users. Many LBS users have direction-aware search requirement that answers must be in a search direction. Howe...
Guoliang Li, Jianhua Feng, Jing Xu
BMCBI
2008
75views more  BMCBI 2008»
13 years 8 months ago
Re-searcher: a system for recurrent detection of homologous protein sequences
Background: Sequence searches are routinely employed to detect and annotate related proteins. However, a rapid growth of databases necessitates a frequent repetition of sequence s...
Valdemaras Repsys, Mindaugas Margelevicius, Ceslov...