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GECCO
2007
Springer
211views Optimization» more  GECCO 2007»
15 years 10 months ago
An extremal optimization search method for the protein folding problem: the go-model example
The protein folding problem consists of predicting the functional (native) structure of the protein given its linear sequence of amino acids. Despite extensive progress made in un...
Alena Shmygelska
BMCBI
2007
166views more  BMCBI 2007»
15 years 4 months ago
Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics
Background: In proteomic analysis, MS/MS spectra acquired by mass spectrometer are assigned to peptides by database searching algorithms such as SEQUEST. The assignations of pepti...
Xinning Jiang, Xiaogang Jiang, Guanghui Han, Mingl...
CHI
2011
ACM
14 years 8 months ago
YouPivot: improving recall with contextual search
According to cognitive science literature, human memory is predicated on contextual cues (e.g., room, music) in the environment. During recall tasks, we associate information/acti...
Joshua M. Hailpern, Nicholas Jitkoff, Andrew Warr,...
BMCBI
2011
14 years 8 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
KDD
2004
ACM
148views Data Mining» more  KDD 2004»
16 years 4 months ago
Spying Out Accurate User Preferences for Search Engine Adaptation
Abstract. Most existing search engines employ static ranking algorithms that do not adapt to the specific needs of users. Recently, some researchers have studied the use of clickth...
Lin Deng, Wilfred Ng, Xiaoyong Chai, Dik Lun Lee