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» Hit integration for identifying optimal spaced seeds
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BMCBI
2010
81views more  BMCBI 2010»
13 years 11 months ago
Hit integration for identifying optimal spaced seeds
Won-Hyoung Chung, Seong-Bae Park
BMCBI
2008
95views more  BMCBI 2008»
13 years 11 months ago
Universal seeds for cDNA-to-genome comparison
Background: To meet the needs of gene annotation for newly sequenced organisms, optimized spaced seeds can be implemented into cross-species sequence alignment programs to accurat...
Leming Zhou, Jonathan Stanton, Liliana Florea
BMCBI
2007
148views more  BMCBI 2007»
13 years 11 months ago
Toward the automated generation of genome-scale metabolic networks in the SEED
Background: Current methods for the automated generation of genome-scale metabolic networks focus on genome annotation and preliminary biochemical reaction network assembly, but d...
Matthew DeJongh, Kevin Formsma, Paul Boillot, John...
SIGMOD
1996
ACM
131views Database» more  SIGMOD 1996»
14 years 3 months ago
Materialized View Maintenance and Integrity Constraint Checking: Trading Space for Time
We investigate the problem of incremental maintenance of an SQL view in the face of database updates, and show that it is possible to reduce the total time cost of view maintenanc...
Kenneth A. Ross, Divesh Srivastava, S. Sudarshan
GECCO
2010
Springer
248views Optimization» more  GECCO 2010»
14 years 2 months ago
Integrating decision space diversity into hypervolume-based multiobjective search
Multiobjective optimization in general aims at learning about the problem at hand. Usually the focus lies on objective space properties such as the front shape and the distributio...
Tamara Ulrich, Johannes Bader, Eckart Zitzler