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KDID
2004
149views Database» more  KDID 2004»
13 years 10 months ago
Database Transposition for Constrained (Closed) Pattern Mining
Abstract. Recently, different works proposed a new way to mine patterns in databases with pathological size. For example, experiments in genome biology usually provide databases wi...
Baptiste Jeudy, François Rioult
ISMB
2000
13 years 10 months ago
A Statistical Method for Finding Transcription Factor Binding Sites
Understanding the mechanismsthat determine the regulation of geneexpression is an important and challenging problem. A fundamental subproblem is to identify DNA-bindingsites for u...
Saurabh Sinha, Martin Tompa
CONSTRAINTS
2006
120views more  CONSTRAINTS 2006»
13 years 8 months ago
Constraint Models for the Covering Test Problem
Covering arrays can be applied to the testing of software, hardware and advanced materials, and to the effects of hormone interaction on gene expression. In this paper we develop c...
Brahim Hnich, Steven David Prestwich, Evgeny Selen...
NAR
2000
112views more  NAR 2000»
13 years 8 months ago
ExInt: an Exon/Intron database
The Exon/Intron (ExInt) database incorporates information on the exon/intron structure of eukaryotic genes. Features in the database include: intron nucleotide sequence, amino aci...
Meena K. Sakharkar, Manyuan Long, Tin Wee Tan, San...
RECOMB
2006
Springer
14 years 9 months ago
A Parsimony Approach to Genome-Wide Ortholog Assignment
The assignment of orthologous genes between a pair of genomes is a fundamental and challenging problem in comparative genomics, since many computational methods for solving various...
Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang...