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» How Large is the Set of Disjunctive Sequences
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RECOMB
2004
Springer
16 years 5 months ago
The evolutionary capacity of protein structures
In nature, one finds large collections of different protein sequences exhibiting roughly the same three-dimensional structure, and this observation underpins the study of structur...
Leonid Meyerguz, David Kempe, Jon M. Kleinberg, Ro...
218
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BMCBI
2011
14 years 9 months ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
IPPS
2007
IEEE
15 years 12 months ago
High Performance Database Searching with HMMer on FPGAs
1 Profile Hidden Markov Models (profile HMMs) are used as a popular bioinformatics tool for sensitive database searching, e.g. a set of not annotated protein sequences is compared...
Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt
CVPR
2010
IEEE
16 years 1 months ago
Learning Shift-Invariant Sparse Representation of Actions
A central problem in the analysis of motion capture (Mo- Cap) data is how to decompose motion sequences into primitives. Ideally, a description in terms of primitives should fac...
Yi Li
CISS
2008
IEEE
16 years 2 days ago
Near optimal lossy source coding and compression-based denoising via Markov chain Monte Carlo
— We propose an implementable new universal lossy source coding algorithm. The new algorithm utilizes two wellknown tools from statistical physics and computer science: Gibbs sam...
Shirin Jalali, Tsachy Weissman