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» How Large is the Set of Disjunctive Sequences
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RECOMB
2004
Springer
14 years 7 months ago
The evolutionary capacity of protein structures
In nature, one finds large collections of different protein sequences exhibiting roughly the same three-dimensional structure, and this observation underpins the study of structur...
Leonid Meyerguz, David Kempe, Jon M. Kleinberg, Ro...
BMCBI
2011
12 years 11 months ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
IPPS
2007
IEEE
14 years 1 months ago
High Performance Database Searching with HMMer on FPGAs
1 Profile Hidden Markov Models (profile HMMs) are used as a popular bioinformatics tool for sensitive database searching, e.g. a set of not annotated protein sequences is compared...
Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt
CVPR
2010
IEEE
14 years 3 months ago
Learning Shift-Invariant Sparse Representation of Actions
A central problem in the analysis of motion capture (Mo- Cap) data is how to decompose motion sequences into primitives. Ideally, a description in terms of primitives should fac...
Yi Li
CISS
2008
IEEE
14 years 1 months ago
Near optimal lossy source coding and compression-based denoising via Markov chain Monte Carlo
— We propose an implementable new universal lossy source coding algorithm. The new algorithm utilizes two wellknown tools from statistical physics and computer science: Gibbs sam...
Shirin Jalali, Tsachy Weissman