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CONEXT
2009
ACM
13 years 7 months ago
Improving internet-wide routing protocols convergence with MRPC timers
The behavior of routing protocols during convergence is critical as it impacts end-to-end performance. Network convergence is particularly important in BGP, the current interdomai...
Anthony J. Lambert, Marc-Olivier Buob, Steve Uhlig
BMCBI
2010
148views more  BMCBI 2010»
13 years 6 months ago
Calling SNPs without a reference sequence
Background: The most common application for the next-generation sequencing technologies is resequencing, where short reads from the genome of an individual are aligned to a refere...
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan...
BMCBI
2010
135views more  BMCBI 2010»
13 years 6 months ago
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Background: Genomic data provide a wealth of new information for phylogenetic analysis. Yet making use of this data requires phylogenetic methods that can efficiently analyze extr...
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulens...
BMCBI
2010
105views more  BMCBI 2010»
13 years 6 months ago
Predicting phenotypic traits of prokaryotes from protein domain frequencies
Background: Establishing the relationship between an organism's genome sequence and its phenotype is a fundamental challenge that remains largely unsolved. Accurately predict...
Thomas Lingner, Stefanie Mühlhausen, Toni Gab...
BMCBI
2007
107views more  BMCBI 2007»
13 years 6 months ago
Reuse of structural domain-domain interactions in protein networks
Background: Protein interactions are thought to be largely mediated by interactions between structural domains. Databases such as iPfam relate interactions in protein structures t...
Benjamin Schuster-Böckler, Alex Bateman