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JAR
2007
72views more  JAR 2007»
13 years 10 months ago
Inferring Phylogenetic Trees Using Answer Set Programming
We describe the reconstruction of a phylogeny for a set of taxa, with a character-based cladistics approach, in a declarative knowledge representation formalism, and show how to u...
Daniel R. Brooks, Esra Erdem, Selim T. Erdogan, Ja...
JUCS
2010
148views more  JUCS 2010»
13 years 8 months ago
Applying RFD to Construct Optimal Quality-Investment Trees
: River Formation Dynamics (RFD) is an evolutionary computation method based on copying how drops form rivers by eroding the ground and depositing sediments. Given a cost-evaluated...
Pablo Rabanal, Ismael Rodríguez, Fernando R...
SODA
2003
ACM
119views Algorithms» more  SODA 2003»
13 years 11 months ago
Simultaneous optimization for concave costs: single sink aggregation or single source buy-at-bulk
We consider the problem of finding efficient trees to send information from k sources to a single sink in a network where information can be aggregated at intermediate nodes in t...
Ashish Goel, Deborah Estrin
BMCBI
2010
135views more  BMCBI 2010»
13 years 10 months ago
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Background: Genomic data provide a wealth of new information for phylogenetic analysis. Yet making use of this data requires phylogenetic methods that can efficiently analyze extr...
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulens...
CSDA
2008
120views more  CSDA 2008»
13 years 10 months ago
Tree-structured smooth transition regression models
ABSTRACT. This paper introduces a tree-based model that combines aspects of CART (Classification and Regression Trees) and STR (Smooth Transition Regression). The model is called t...
Joel Corrêa da Rosa, Alvaro Veiga, Marcelo C...