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PAKDD
2005
ACM
180views Data Mining» more  PAKDD 2005»
15 years 8 months ago
Conditional Random Fields for Transmembrane Helix Prediction
Abstract. It is estimated that 20% of genes in the human genome encode for integral membrane proteins (IMPs) and some estimates are much higher. IMPs control a broad range of event...
Lior Lukov, Sanjay Chawla, W. Bret Church
118
Voted
WABI
2005
Springer
132views Bioinformatics» more  WABI 2005»
15 years 8 months ago
Perfect Sorting by Reversals Is Not Always Difficult
—We propose new algorithms for computing pairwise rearrangement scenarios that conserve the combinatorial structure of genomes. More precisely, we investigate the problem of sort...
Sèverine Bérard, Anne Bergeron, Cedr...
CSB
2003
IEEE
15 years 7 months ago
Estimating Recombination Rate Distribution by Optimal Quantization
We obtain recombination rate distribution functions for all human chromosomes using an optimal quantization method. This non-parametric method allows us to control over-/under-fi...
Mingzhou Song, Stéphane Boissinot, Robert M...
124
Voted
BIBM
2009
IEEE
118views Bioinformatics» more  BIBM 2009»
15 years 6 months ago
Inexact Local Alignment Search over Suffix Arrays
We describe an algorithm for finding approximate seeds for DNA homology searches. In contrast to previous algorithms that use exact or spaced seeds, our approximate seeds may conta...
Mohammadreza Ghodsi, Mihai Pop
EUSFLAT
2007
193views Fuzzy Logic» more  EUSFLAT 2007»
15 years 4 months ago
Fuzzy Set Theory and Philosophical Foundations of Medicine
Dealing with notions of health, illness and disease contains dealing with fuzziness. As the paper will demonstrate, states of these notions do not only exist or not exist. The med...
Julia Limberg, Rudolf Seising