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NAR
2006
177views more  NAR 2006»
13 years 10 months ago
PUMA2 - grid-based high-throughput analysis of genomes and metabolic pathways
The PUMA2 system (available at http://compbio.mcs. 10 anl.gov/puma2) is an interactive, integrated bioinformatics environment for high-throughput genetic sequence analysis and met...
Natalia Maltsev, Elizabeth M. Glass, Dinanath Sula...
BMCBI
2006
129views more  BMCBI 2006»
13 years 10 months ago
EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity
Background: Evolutionary genomics requires management and filtering of large numbers of diverse genomic sequences for accurate analysis and inference on evolutionary processes of ...
Laila A. Nahum, Matthew T. Reynolds, Zhengyuan O. ...
NAR
2000
94views more  NAR 2000»
13 years 9 months ago
INE: a rice genome database with an integrated map view
The Rice Genome Research Program (RGP) launched a large-scale rice genome sequencing in 1998 aimed at decoding all genetic information in rice. A new genome database called INE (I...
Katsumi Sakata, Baltazar A. Antonio, Yoshiyuki Muk...
NAR
2000
135views more  NAR 2000»
13 years 9 months ago
HGBASE: a database of SNPs and other variations in and around human genes
Human genome polymorphism is expected to play a key role in defining the etiologic basis of phenotypic differences between individuals in aspects such as drug responses and common...
Anthony J. Brookes, Heikki Lehväslaiho, Maria...
BMCBI
2008
128views more  BMCBI 2008»
13 years 10 months ago
Efficient computation of absent words in genomic sequences
Background: Analysis of sequence composition is a routine task in genome research. Organisms are characterized by their base composition, dinucleotide relative abundance, codon us...
Julia Herold, Stefan Kurtz, Robert Giegerich