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BMCBI
2008
130views more  BMCBI 2008»
15 years 2 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
BMCBI
2005
117views more  BMCBI 2005»
15 years 2 months ago
Differentiation of regions with atypical oligonucleotide composition in bacterial genomes
Background: Complete sequencing of bacterial genomes has become a common technique of present day microbiology. Thereafter, data mining in the complete sequence is an essential st...
Oleg N. Reva, Burkhard Tümmler
BMCBI
2010
189views more  BMCBI 2010»
15 years 23 days ago
solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database
Background: A common approach to understanding the genetic basis of complex traits is through identification of associated quantitative trait loci (QTL). Fine mapping QTLs require...
Isaak Y. Tecle, Naama Menda, Robert M. Buels, Esth...
ICDE
2006
IEEE
143views Database» more  ICDE 2006»
15 years 8 months ago
Using Data-Extraction Ontologies to Foster Automating Semantic Annotation
Semantic annotation adds formal metadata to web pages to link web data with ontology concepts. Automated semantic annotation is a primary way of enabling the semantic web. A main ...
Yihong Ding, David W. Embley
BMCBI
2007
86views more  BMCBI 2007»
15 years 2 months ago
Detecting microsatellites within genomes: significant variation among algorithms
Background: Microsatellites are short, tandemly-repeated DNA sequences which are widely distributed among genomes. Their structure, role and evolution can be analyzed based on exh...
Sébastien Leclercq, Eric Rivals, Philippe J...