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BMCBI
2010
96views more  BMCBI 2010»
13 years 9 months ago
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Background: Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing (ChIP-seq) or ChIP followed by genome tiling array analysis (ChIP-chip) have become standar...
Lihua J. Zhu, Claude Gazin, Nathan D. Lawson, Herv...
RECOMB
2002
Springer
14 years 9 months ago
String barcoding: uncovering optimal virus signatures
There are many critical situations when one needs to rapidly identify an unidentified pathogen from among a given set of previously sequenced pathogens. DNA or RNA hybridization c...
Sam Rash, Dan Gusfield
IWDC
2005
Springer
138views Communications» more  IWDC 2005»
14 years 2 months ago
Hierarchical Routing in Sensor Networks Using k-Dominating Sets
For a connected graph, representing a sensor network, distributed algorithms for the Set Covering Problem can be employed to construct reasonably small subsets of the nodes, calle...
Michael Q. Rieck, Subhankar Dhar
BMCBI
2008
136views more  BMCBI 2008»
13 years 9 months ago
LOMA: A fast method to generate efficient tagged-random primers despite amplification bias of random PCR on pathogens
Background: Pathogen detection using DNA microarrays has the potential to become a fast and comprehensive diagnostics tool. However, since pathogen detection chips currently utili...
Wah-Heng Lee, Christopher W. Wong, Wan Yee Leong, ...
BMCBI
2011
13 years 3 months ago
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
Background: Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell