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» Hybrid Tree Reconstruction Methods
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GECCO
2006
Springer
151views Optimization» more  GECCO 2006»
14 years 4 days ago
Neighbourhood searches for the bounded diameter minimum spanning tree problem embedded in a VNS, EA, and ACO
We consider the Bounded Diameter Minimum Spanning Tree problem and describe four neighbourhood searches for it. They are used as local improvement strategies within a variable nei...
Martin Gruber, Jano I. van Hemert, Günther R....
SODA
2004
ACM
124views Algorithms» more  SODA 2004»
13 years 9 months ago
On contract-and-refine transformations between phylogenetic trees
The inference of evolutionary trees using approaches which attempt to solve the maximum parsimony (MP) and maximum likelihood (ML) optimization problems is a standard part of much...
Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy ...
IPPS
2007
IEEE
14 years 2 months ago
Building the Tree of Life on Terascale Systems
Bayesian phylogenetic inference is an important alternative to maximum likelihood-based phylogenetic method. However, inferring large trees using the Bayesian approach is computat...
Xizhou Feng, Kirk W. Cameron, Carlos P. Sosa, Bria...
BMCBI
2006
112views more  BMCBI 2006»
13 years 8 months ago
Phylophenetic properties of metabolic pathway topologies as revealed by global analysis
Background: As phenotypic features derived from heritable characters, the topologies of metabolic pathways contain both phylogenetic and phenetic components. In the post-genomic e...
Yong Zhang, Shaojuan Li, Geir Skogerbø, Zhi...
NAR
2011
198views Computer Vision» more  NAR 2011»
12 years 11 months ago
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralo
The growing availability of complete genomic sequences from diverse species has brought about the need to scale up phylogenomic analyses, including the reconstruction of large col...
Jaime Huerta-Cepas, Salvador Capella-Gutiér...