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BMCBI
2006
153views more  BMCBI 2006»
13 years 7 months ago
2DDB - a bioinformatics solution for analysis of quantitative proteomics data
Background: We present 2DDB, a bioinformatics solution for storage, integration and analysis of quantitative proteomics data. As the data complexity and the rate with which it is ...
Lars Malmström, György Marko-Varga, Guni...
BMCBI
2010
96views more  BMCBI 2010»
13 years 7 months ago
FluTyper-an algorithm for automated typing and subtyping of the influenza virus from high resolution mass spectral data
Background: High resolution mass spectrometry has been employed to rapidly and accurately type and subtype influenza viruses. The detection of signature peptides with unique theor...
Jason W. H. Wong, Alexander B. Schwahn, Kevin M. D...
BMCBI
2008
126views more  BMCBI 2008»
13 years 7 months ago
Discovery of dominant and dormant genes from expression data using a novel generalization of SNR for multi-class problems
Background: The Signal-to-Noise-Ratio (SNR) is often used for identification of biomarkers for two-class problems and no formal and useful generalization of SNR is available for m...
Yu-Shuen Tsai, Chin-Teng Lin, George C. Tseng, I-F...
BMCBI
2008
142views more  BMCBI 2008»
13 years 7 months ago
Identification of biomarkers for genotyping Aspergilli using non-linear methods for clustering and classification
Background: In the present investigation, we have used an exhaustive metabolite profiling approach to search for biomarkers in recombinant Aspergillus nidulans (mutants that produ...
Irene Kouskoumvekaki, Zhiyong Yang, Svava Ó...
BMCBI
2008
93views more  BMCBI 2008»
13 years 7 months ago
A software application for comparing large numbers of high resolution MALDI-FTICR MS spectra demonstrated by searching candidate
Background: A JavaTM application is presented, which compares large numbers (n > 100) of raw FTICR mass spectra from patients and controls. Two peptide profile matrices can be ...
Mark K. Titulaer, Dana A. N. Mustafa, Ivar Siccama...