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BIBM
2008
IEEE
108views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Systematic Evaluation of Scaling Methods for Gene Expression Data
Even after an experimentally prepared gene expression data set has been pre-processed to account for variations in the microarray technology, there may be inconsistencies between ...
Gaurav Pandey, Lakshmi Naarayanan Ramakrishnan, Mi...
BMCBI
2010
162views more  BMCBI 2010»
13 years 7 months ago
Moara: a Java library for extracting and normalizing gene and protein mentions
Background: Gene/protein recognition and normalization are important preliminary steps for many biological text mining tasks, such as information retrieval, protein-protein intera...
Mariana L. Neves, José María Carazo,...
BMCBI
2010
136views more  BMCBI 2010»
13 years 7 months ago
A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles
Background: Many research results show that the biological systems are composed of functional modules. Members in the same module usually have common functions. This is useful inf...
Chia-Hao Chin, Shu-Hwa Chen, Chin-Wen Ho, Ming-Tat...
IWANN
2009
Springer
14 years 2 months ago
Identification of Chemical Entities in Patent Documents
Biomedical literature is an important source of information for chemical compounds. However, different representations and nomenclatures for chemical entities exist, which makes th...
Tiago Grego, Piotr Pezik, Francisco M. Couto, Diet...
BMCBI
2008
153views more  BMCBI 2008»
13 years 7 months ago
How to make the most of NE dictionaries in statistical NER
Background: When term ambiguity and variability are very high, dictionary-based Named Entity Recognition (NER) is not an ideal solution even though large-scale terminological reso...
Yutaka Sasaki, Yoshimasa Tsuruoka, John McNaught, ...