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BMCBI
2007
167views more  BMCBI 2007»
13 years 10 months ago
Applying negative rule mining to improve genome annotation
Background: Unsupervised annotation of proteins by software pipelines suffers from very high error rates. Spurious functional assignments are usually caused by unwarranted homolog...
Irena I. Artamonova, Goar Frishman, Dmitrij Frishm...
BMCBI
2010
131views more  BMCBI 2010»
13 years 10 months ago
Prediction of epigenetically regulated genes in breast cancer cell lines
Background: Methylation of CpG islands within the DNA promoter regions is one mechanism that leads to aberrant gene expression in cancer. In particular, the abnormal methylation o...
Leandro A. Loss, Anguraj Sadanandam, Steffen Durin...
JMLR
2006
96views more  JMLR 2006»
13 years 10 months ago
A Hierarchy of Support Vector Machines for Pattern Detection
We introduce a computational design for pattern detection based on a tree-structured network of support vector machines (SVMs). An SVM is associated with each cell in a recursive ...
Hichem Sahbi, Donald Geman
BMCBI
2005
190views more  BMCBI 2005»
13 years 10 months ago
An Entropy-based gene selection method for cancer classification using microarray data
Background: Accurate diagnosis of cancer subtypes remains a challenging problem. Building classifiers based on gene expression data is a promising approach; yet the selection of n...
Xiaoxing Liu, Arun Krishnan, Adrian Mondry
CGO
2005
IEEE
14 years 3 months ago
A General Compiler Framework for Speculative Optimizations Using Data Speculative Code Motion
Data speculative optimization refers to code transformations that allow load and store instructions to be moved across potentially dependent memory operations. Existing research w...
Xiaoru Dai, Antonia Zhai, Wei-Chung Hsu, Pen-Chung...