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» Identifying Structural Motifs in Proteins
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CIBCB
2005
IEEE
14 years 3 months ago
Toward Protein Structure Analysis with Self-Organizing Maps
- Establishing structure-function relationships on the proteomic scale is a unique challenge faced by bioinformatics and molecular biosciences. Large protein families represent nat...
Lutz Hamel, Gongqin Sun, Jing Zhang
CBMS
2006
IEEE
14 years 3 months ago
JSSPrediction: a Framework to Predict Protein Secondary Structures Using Integration
Identifying protein secondary structures is a difficult task. Recently, a lot of software tools for protein secondary structures prediction have been produced and made available ...
Luigi Palopoli, Simona E. Rombo, Giorgio Terracina...
BMCBI
2007
117views more  BMCBI 2007»
13 years 10 months ago
Supervised multivariate analysis of sequence groups to identify specificity determining residues
Background: Proteins that evolve from a common ancestor can change functionality over time, and it is important to be able identify residues that cause this change. In this paper ...
Iain M. Wallace, Desmond G. Higgins
NAR
2007
120views more  NAR 2007»
13 years 9 months ago
TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method
TOPOFIT-DB (T-DB) is a public web-based database of protein structural alignments based on the TOPOFIT method, providing a comprehensive resource for comparative analysis of prote...
Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyi...
BMCBI
2007
148views more  BMCBI 2007»
13 years 10 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...