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RECOMB
2006
Springer
14 years 7 months ago
Identification and Evaluation of Functional Modules in Gene Co-expression Networks
Abstract. Identifying gene functional modules is an important step towards elucidating gene functions at a global scale. In this paper, we introduce a simple method to construct ge...
Jianhua Ruan, Weixiong Zhang
WWW
2010
ACM
14 years 2 months ago
Sampling community structure
We propose a novel method, based on concepts from expander graphs, to sample communities in networks. We show that our sampling method, unlike previous techniques, produces subgra...
Arun S. Maiya, Tanya Y. Berger-Wolf
ICTAI
2009
IEEE
14 years 1 months ago
A Multi-objective Genetic Algorithm for Community Detection in Networks
A multiobjective genetic algorithm to uncover community structure in complex network is proposed. The algorithm optimizes two objective functions able to identify densely connecte...
Clara Pizzuti
BMCBI
2010
202views more  BMCBI 2010»
13 years 7 months ago
NeMo: Network Module identification in Cytoscape
Background: As the size of the known human interactome grows, biologists increasingly rely on computational tools to identify patterns that represent protein complexes and pathway...
Corban G. Rivera, Rachit Vakil, Joel S. Bader
BMCBI
2008
131views more  BMCBI 2008»
13 years 7 months ago
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
Background: Identification of protein complexes is crucial for understanding principles of cellular organization and functions. As the size of protein-protein interaction set incr...
Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Ch...