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SPIRE
2000
Springer
13 years 10 months ago
Virtual Test Tubes: A New Methodology for Computing
Biomolecular computing (BMC) aims to capture the innumerable advantages that biological molecules have gained in the course of millions of years of evolution to perform computatio...
Max H. Garzon, Evan Drumwright, Russell J. Deaton,...
BMCBI
2006
115views more  BMCBI 2006»
13 years 7 months ago
The accuracy of several multiple sequence alignment programs for proteins
Background: There have been many algorithms and software programs implemented for the inference of multiple sequence alignments of protein and DNA sequences. The "true" ...
Paulo A. S. Nuin, Zhouzhi Wang, Elisabeth R. M. Ti...
BIOINFORMATICS
2010
139views more  BIOINFORMATICS 2010»
13 years 7 months ago
adephylo: new tools for investigating the phylogenetic signal in biological traits
Summary: adephylo is a package for the R software dedicated to the analysis of comparative evolutionary data. Phylogenetic comparative methods initially aimed at accounting for or...
Thibaut Jombart, François Balloux, St&eacut...
BMCBI
2011
13 years 1 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
GECCO
2010
Springer
172views Optimization» more  GECCO 2010»
13 years 11 months ago
Designing better fitness functions for automated program repair
Evolutionary methods have been used to repair programs automatically, with promising results. However, the fitness function used to achieve these results was based on a few simpl...
Ethan Fast, Claire Le Goues, Stephanie Forrest, We...