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JPDC
2007
167views more  JPDC 2007»
13 years 7 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
JCB
1998
129views more  JCB 1998»
13 years 7 months ago
A Sticker-Based Model for DNA Computation
We introduce a new model of molecular computation that we call the sticker model. Like many previous proposals it makes use of DNA strands as the physical substrate in which infor...
Sam T. Roweis, Erik Winfree, Richard Burgoyne, Nic...
HPCA
2007
IEEE
14 years 8 months ago
HARD: Hardware-Assisted Lockset-based Race Detection
The emergence of multicore architectures will lead to an increase in the use of multithreaded applications that are prone to synchronization bugs, such as data races. Software sol...
Pin Zhou, Radu Teodorescu, Yuanyuan Zhou
IEEEPACT
2008
IEEE
14 years 2 months ago
Mars: a MapReduce framework on graphics processors
We design and implement Mars, a MapReduce framework, on graphics processors (GPUs). MapReduce is a distributed programming framework originally proposed by Google for the ease of ...
Bingsheng He, Wenbin Fang, Qiong Luo, Naga K. Govi...
IEEEPACT
2006
IEEE
14 years 1 months ago
Whole-program optimization of global variable layout
On machines with high-performance processors, the memory system continues to be a performance bottleneck. Compilers insert prefetch operations and reorder data accesses to improve...
Nathaniel McIntosh, Sandya Mannarswamy, Robert Hun...