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ICS
2010
Tsinghua U.
14 years 19 days ago
InterferenceRemoval: removing interference of disk access for MPI programs through data replication
As the number of I/O-intensive MPI programs becomes increasingly large, many efforts have been made to improve I/O performance, on both software and architecture sides. On the sof...
Xuechen Zhang, Song Jiang
BMCBI
2007
144views more  BMCBI 2007»
13 years 10 months ago
Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data
Background: In practice many biological time series measurements, including gene microarrays, are conducted at time points that seem to be interesting in the biologist's opin...
Miika Ahdesmäki, Harri Lähdesmäki, ...
BMCBI
2006
113views more  BMCBI 2006»
13 years 10 months ago
QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyp
Background: Single nucleotide polymorphisms (SNPs) are important tools in studying complex genetic traits and genome evolution. Computational strategies for SNP discovery make use...
Jifeng Tang, Ben Vosman, Roeland E. Voorrips, C. G...
BMCBI
2010
97views more  BMCBI 2010»
13 years 7 months ago
Preprocessing of gene expression data by optimally robust estimators
Background: The preprocessing of gene expression data obtained from several platforms routinely includes the aggregation of multiple raw signal intensities to one expression value...
Matthias Kohl, Hans-Peter Deigner
SSDBM
2010
IEEE
220views Database» more  SSDBM 2010»
14 years 2 months ago
Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data
Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....
Astrid Rheinländer, Martin Knobloch, Nicky Ho...