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BMCBI
2011
13 years 2 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
GECCO
2007
Springer
211views Optimization» more  GECCO 2007»
14 years 1 months ago
An extremal optimization search method for the protein folding problem: the go-model example
The protein folding problem consists of predicting the functional (native) structure of the protein given its linear sequence of amino acids. Despite extensive progress made in un...
Alena Shmygelska
SIAMSC
2010
125views more  SIAMSC 2010»
13 years 6 months ago
A Parallel Geometric Multigrid Method for Finite Elements on Octree Meshes
Abstract. In this article, we present a parallel geometric multigrid algorithm for solving elliptic partial differential equations (PDEs) on octree based conforming finite elemen...
Rahul S. Sampath, George Biros
ASPLOS
2009
ACM
14 years 8 months ago
DMP: deterministic shared memory multiprocessing
Current shared memory multicore and multiprocessor systems are nondeterministic. Each time these systems execute a multithreaded application, even if supplied with the same input,...
Joseph Devietti, Brandon Lucia, Luis Ceze, Mark Os...
ICCD
2004
IEEE
135views Hardware» more  ICCD 2004»
14 years 4 months ago
Design Methodologies and Architecture Solutions for High-Performance Interconnects
In Deep Sub-Micron (DSM) technologies, interconnects play a crucial role in the correct functionality and largely impact the performance of complex System-on-Chip (SoC) designs. F...
Davide Pandini, Cristiano Forzan, Livio Baldi