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    BMCBI
    2004
    208views more  BMCBI 2004»
    Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
    13 years 8 months ago
    Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
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    Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
    Vadim Alexandrov, Mark Gerstein
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    BMCBI
    2004
    127views more  BMCBI 2004»
    MolTalk - a programming library for protein structures and structure analysis
    13 years 8 months ago
    MolTalk - a programming library for protein structures and structure analysis
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    Background: Two of the mostly unsolved but increasingly urgent problems for modern biologists are a) to quickly and easily analyse protein structures and b) to comprehensively min...
    Alexander V. Diemand, Holger Scheib
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    CCE
    2004
    108views Software Engineering» more  CCE 2004»
    Improving convergence of the stochastic decomposition algorithm by using an efficient sampling technique
    13 years 8 months ago
    Improving convergence of the stochastic decomposition algorithm by using an efficient sampling technique
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    This work focuses on the basic stochastic decomposition (SD) algorithm of Higle and Sen [J.L. Higle, S. Sen, Stochastic Decomposition, Kluwer Academic Publishers, 1996] for two-st...
    José María Ponce-Ortega, Vicente Ric...
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    BMCBI
    2002
    109views more  BMCBI 2002»
    Kangaroo - A pattern-matching program for biological sequences
    13 years 8 months ago
    Kangaroo - A pattern-matching program for biological sequences
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    Background: Biologists are often interested in performing a simple database search to identify proteins or genes that contain a well-defined sequence pattern. Many databases do no...
    Doron Betel, Christopher W. V. Hogue
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    CN
    2002
    77views more  CN 2002»
    Architecture of a Web server accelerator
    13 years 8 months ago
    Architecture of a Web server accelerator
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    We describe the design, implementation and performance of a high-performance Web server accelerator which runs on an embedded operating system and improves Web server performance ...
    Junehwa Song, Arun Iyengar, Eric Levy-Abegnoli, Da...
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