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BMCBI
2011
12 years 11 months ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...
BMCBI
2011
12 years 11 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
COMPGEOM
2011
ACM
12 years 11 months ago
Persistence-based clustering in riemannian manifolds
We present a clustering scheme that combines a mode-seeking phase with a cluster merging phase in the corresponding density map. While mode detection is done by a standard graph-b...
Frédéric Chazal, Leonidas J. Guibas,...
EDBT
2011
ACM
256views Database» more  EDBT 2011»
12 years 11 months ago
RanKloud: a scalable ranked query processing framework on hadoop
The popularity of batch-oriented cluster architectures like Hadoop is on the rise. These batch-based systems successfully achieve high degrees of scalability by carefully allocati...
K. Selçuk Candan, Parth Nagarkar, Mithila N...
IWMM
2011
Springer
270views Hardware» more  IWMM 2011»
12 years 10 months ago
Memory management in NUMA multicore systems: trapped between cache contention and interconnect overhead
Multiprocessors based on processors with multiple cores usually include a non-uniform memory architecture (NUMA); even current 2-processor systems with 8 cores exhibit non-uniform...
Zoltan Majo, Thomas R. Gross