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» Improving EAs for Sequencing Problems
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VLDB
1997
ACM
97views Database» more  VLDB 1997»
14 years 2 months ago
The Complexity of Transformation-Based Join Enumeration
Query optimizers that explore a search space exhaustively using transformation rules usually apply all possible rules on each alternative, and stop when no new information is prod...
Arjan Pellenkoft, César A. Galindo-Legaria,...
BMCBI
2010
132views more  BMCBI 2010»
13 years 10 months ago
Parallel multiplicity and error discovery rate (EDR) in microarray experiments
Background: In microarray gene expression profiling experiments, differentially expressed genes (DEGs) are detected from among tens of thousands of genes on an array using statist...
Wayne Wenzhong Xu, Clay J. Carter
ICCS
2007
Springer
14 years 4 months ago
Characterizing Implications of Injective Partial Orders
Abstract. Previous work of the authors has studied a notion of implication between sets of sequences based on the conceptual structure of a Galois lattice, and also a way of repres...
José L. Balcázar, Gemma C. Garriga
BMCBI
2007
111views more  BMCBI 2007»
13 years 10 months ago
Novel definition files for human GeneChips based on GeneAnnot
Background: Improvements in genome sequence annotation revealed discrepancies in the original probeset/gene assignment in Affymetrix microarray and the existence of differences be...
Francesco Ferrari, Stefania Bortoluzzi, Alessandro...
BMCBI
2008
113views more  BMCBI 2008»
13 years 10 months ago
Investigating selection on viruses: a statistical alignment approach
Background: Two problems complicate the study of selection in viral genomes: Firstly, the presence of genes in overlapping reading frames implies that selection in one reading fra...
Saskia de Groot, Thomas Mailund, Gerton Lunter, Jo...