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» Improving EAs for Sequencing Problems
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EMNLP
2010
13 years 7 months ago
Confidence in Structured-Prediction Using Confidence-Weighted Models
Confidence-Weighted linear classifiers (CW) and its successors were shown to perform well on binary and multiclass NLP problems. In this paper we extend the CW approach for sequen...
Avihai Mejer, Koby Crammer
CCECE
2006
IEEE
14 years 3 months ago
Survey of Biological High Performance Computing: Algorithms, Implementations and Outlook Research
During recent years there has been an explosive growth of biological data coming from genome projects, proteomics, protein structure determination, and the rapid expansion in digi...
Nasreddine Hireche, J. M. Pierre Langlois, Gabriel...
WG
2005
Springer
14 years 2 months ago
Fixed-Parameter Algorithms for Protein Similarity Search Under mRNA Structure Constraints
Abstract. In the context of protein engineering, we consider the problem of computing an mRNA sequence of maximal codon-wise similarity to a given mRNA (and consequently, to a give...
Guillaume Blin, Guillaume Fertin, Danny Hermelin, ...
CSDA
2007
96views more  CSDA 2007»
13 years 9 months ago
On a quadratic eigenproblem occurring in regularized total least squares
In a recent paper Sima, Van Huffel and Golub [Regularized total least squares based on quadratic eigenvalue problem solvers. BIT Numerical Mathematics 44, 793 - 812 (2004)] sugges...
J. Lampe, H. Voss
IJIT
2004
13 years 10 months ago
Computing Entropy for Ortholog Detection
Abstract-- Biological sequences from different species are called orthologs if they evolved from a sequence of a common ancestor species and they have the same biological function....
Hsing-Kuo Pao, John Case