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» Improving EAs for Sequencing Problems
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WABI
2007
Springer
110views Bioinformatics» more  WABI 2007»
14 years 3 months ago
Haplotype Inference Via Hierarchical Genotype Parsing
The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
Pasi Rastas, Esko Ukkonen
ICMCS
2006
IEEE
120views Multimedia» more  ICMCS 2006»
14 years 3 months ago
SVM-Based Shot Boundary Detection with a Novel Feature
This paper describes our new algorithm for shot boundary detection and its evaluation. We adopt a 2-stage data fusion approach with SVM technique to decide whether a boundary exis...
Kazunori Matsumoto, Masaki Naito, Keiichiro Hoashi...
GCB
2000
Springer
137views Biometrics» more  GCB 2000»
14 years 24 days ago
Detecting Sporadic Recombination in DNA Alignments with Hidden Markov Models
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets fro...
Dirk Husmeier, Frank Wright
TIT
2008
74views more  TIT 2008»
13 years 9 months ago
Optimal Parsing Trees for Run-Length Coding of Biased Data
Abstract-- We study coding schemes which encode unconstrained sequences into run-length-limited (d, k)-constrained sequences. We present a general framework for the construction of...
Sharon Aviran, Paul H. Siegel, Jack K. Wolf
ICDM
2007
IEEE
227views Data Mining» more  ICDM 2007»
14 years 3 months ago
Optimal Subsequence Bijection
We consider the problem of elastic matching of sequences of real numbers. Since both a query and a target sequence may be noisy, i.e., contain some outlier elements, it is desirab...
Longin Jan Latecki, Qiang Wang, Suzan Koknar-Tezel...