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» Improving EAs for Sequencing Problems
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RECOMB
2004
Springer
14 years 9 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
BMCBI
2005
119views more  BMCBI 2005»
13 years 9 months ago
The distance-profile representation and its application to detection of distantly related protein families
Background: Detecting homology between remotely related protein families is an important problem in computational biology since the biological properties of uncharacterized protei...
Chin-Jen Ku, Golan Yona
BMCBI
2010
134views more  BMCBI 2010»
13 years 9 months ago
BayesMotif: de novo protein sorting motif discovery from impure datasets
Background: Protein sorting is the process that newly synthesized proteins are transported to their target locations within or outside of the cell. This process is precisely regul...
Jianjun Hu, Fan Zhang
STOC
2007
ACM
100views Algorithms» more  STOC 2007»
14 years 9 months ago
Reordering buffers for general metric spaces
In the reordering buffer problem, we are given an input sequence of requests for service each of which corresponds to a point in a metric space. The cost of serving the requests h...
Matthias Englert, Harald Räcke, Matthias West...
ISPAN
1997
IEEE
14 years 1 months ago
RMESH Algorithms for Parallel String Matching
Abstract- String matching problem received much attention over the years due to its importance in various applications such as text/file comparison, DNA sequencing, search engines,...
Hsi-Chieh Lee, Fikret Erçal