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» Improving EAs for Sequencing Problems
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131
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IJBRA
2007
80views more  IJBRA 2007»
15 years 3 months ago
On predicting secondary structure transition
A function of a protein is dependent on its structure; therefore, predicting a protein structure from an amino acid sequence is an active area of research. Optimally predicting a ...
Raja Loganantharaj, Vivek Philip
341
Voted
RECOMB
2012
Springer
13 years 6 months ago
Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising
We develop a novel and general approach to estimating the accuracy of protein multiple sequence alignments without knowledge of a reference alignment, and use our approach to addre...
Dan F. DeBlasio, Travis J. Wheeler, John D. Kececi...
135
Voted
ENGL
2007
94views more  ENGL 2007»
15 years 3 months ago
Common subproofs in proof pairs
Abstract—In any formal theory, a proof is a sequence of well formed formulas (wff). Here, we consider the digraph whose nodes are proofs and the edges are pairs of proofs such t...
Guillermo Morales-Luna
151
Voted
CP
2009
Springer
15 years 6 months ago
Constraint-Based Local Search for the Automatic Generation of Architectural Tests
Abstract. This paper considers the automatic generation of architectural tests (ATGP), a fundamental problem in processor validation. ATGPs are complex conditional constraint satis...
Pascal Van Hentenryck, Carleton Coffrin, Boris Gut...
CC
2008
Springer
193views System Software» more  CC 2008»
15 years 5 months ago
Automatic Transformations for Communication-Minimized Parallelization and Locality Optimization in the Polyhedral Model
The polyhedral model provides powerful abstractions to optimize loop nests with regular accesses. Affine transformations in this model capture a complex sequence of execution-reord...
Uday Bondhugula, Muthu Manikandan Baskaran, Sriram...