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MICAI
2007
Springer
14 years 2 months ago
Handling Constraints in Particle Swarm Optimization Using a Small Population Size
This paper presents a particle swarm optimizer for solving constrained optimization problems which adopts a very small population size (five particles). The proposed approach uses...
Juan Carlos Fuentes Cabrera, Carlos A. Coello Coel...
PLDI
2004
ACM
14 years 1 months ago
Fast searches for effective optimization phase sequences
It has long been known that a fixed ordering of optimization phases will not produce the best code for every application. One approach for addressing this phase ordering problem ...
Prasad Kulkarni, Stephen Hines, Jason Hiser, David...
BMCBI
2007
233views more  BMCBI 2007»
13 years 8 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
BMCBI
2005
92views more  BMCBI 2005»
13 years 7 months ago
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
Background: In a previous report (La et al., Proteins, 2005), we have demonstrated that the identification of phylogenetic motifs, protein sequence fragments conserving the overal...
David La, Dennis R. Livesay
GECCO
2006
Springer
144views Optimization» more  GECCO 2006»
13 years 11 months ago
On semi-supervised clustering via multiobjective optimization
Semi-supervised classification uses aspects of both unsupervised and supervised learning to improve upon the performance of traditional classification methods. Semi-supervised clu...
Julia Handl, Joshua D. Knowles