Evolutionary methods have been used to repair programs automatically, with promising results. However, the fitness function used to achieve these results was based on a few simpl...
Ethan Fast, Claire Le Goues, Stephanie Forrest, We...
Background: Virtually all currently available microRNA target site prediction algorithms require the presence of a (conserved) seed match to the 5' end of the microRNA. Recen...
Martin Sturm, Michael Hackenberg, David Langenberg...
Background: A number of algorithms for steady state analysis of metabolic networks have been developed over the years. Of these, Elementary Mode Analysis (EMA) has proven especial...
Roland Schwarz, Patrick Musch, Axel von Kamp, Bern...
Recently, advances have been made in continuous, normal– distribution–based Estimation–of–Distribution Algorithms (EDAs) by scaling the variance up from the maximum–like...
A tanglegram is a pair of trees on the same set of leaves with matching leaves in the two trees joined by an edge. Tanglegrams are widely used in biology – to compare evolutiona...
Balaji Venkatachalam, Jim Apple, Katherine St. Joh...