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BMCBI
2010
88views more  BMCBI 2010»
13 years 8 months ago
Proteome scanning to predict PDZ domain interactions using support vector machines
Background: PDZ domains mediate protein-protein interactions involved in important biological processes through the recognition of short linear motifs in their target proteins. Tw...
Shirley Hui, Gary D. Bader
DAC
2007
ACM
14 years 13 days ago
Statistical Framework for Technology-Model-Product Co-Design and Convergence
This paper presents a statistical framework to cooperatively design and develop technology, product circuit, benchmarking and model early in the development stage. The statistical...
Choongyeun Cho, Daeik D. Kim, Jonghae Kim, Jean-Ol...
BMCBI
2008
155views more  BMCBI 2008»
13 years 8 months ago
AMMOS: Automated Molecular Mechanics Optimization tool for in silico Screening
Background: Virtual or in silico ligand screening combined with other computational methods is one of the most promising methods to search for new lead compounds, thereby greatly ...
Tania Pencheva, David Lagorce, Ilza Pajeva, Bruno ...
BMCBI
2007
181views more  BMCBI 2007»
13 years 8 months ago
Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
Background: In recent years, mammalian protein-protein interaction network databases have been developed. The interactions in these databases are either extracted manually from lo...
Seth I. Berger, Jeremy M. Posner, Avi Ma'ayan
PEPM
2011
ACM
12 years 11 months ago
Calculating tree navigation with symmetric relational zipper
Navigating through tree structures is a core operation in tree processing programs. Most notably, XML processing programs intensively use XPath, the path specification language t...
Yuta Ikeda, Susumu Nishimura