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BMCBI
2007
126views more  BMCBI 2007»
15 years 4 months ago
Multiple non-collinear TF-map alignments of promoter regions
Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
Enrique Blanco, Roderic Guigó, Xavier Messe...
BMCBI
2007
154views more  BMCBI 2007»
15 years 4 months ago
Inferring biological networks with output kernel trees
Background: Elucidating biological networks between proteins appears nowadays as one of the most important challenges in systems biology. Computational approaches to this problem ...
Pierre Geurts, Nizar Touleimat, Marie Dutreix, Flo...
BMCBI
2007
127views more  BMCBI 2007»
15 years 4 months ago
CORRIE: enzyme sequence annotation with confidence estimates
Using a previously developed automated method for enzyme annotation, we report the reannotation of the ENZYME database and the analysis of local error rates per class. In control ...
Benjamin Audit, Emmanuel D. Levy, Walter R. Gilks,...
BMCBI
2007
115views more  BMCBI 2007»
15 years 4 months ago
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
Background: We performed an exhaustive search for local structural similarities in an ensemble of non-redundant protein functional sites. With the purpose of finding new examples ...
Gabriele Ausiello, Daniele Peluso, Allegra Via, Ma...
ESWA
2006
122views more  ESWA 2006»
15 years 4 months ago
Ontology construction for information classification
Following the advent of the Internet technology and the rapid growth of its applications, users have spent long periods of time browsing through the ocean of information found in ...
Sung-Shun Weng, Hsine-Jen Tsai, Shang-Chia Liu, Ch...
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