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BIOINFORMATICS
2012
11 years 9 months ago
Epigenetic priors for identifying active transcription factor binding sites
Motivation Accurate knowledge of the genome-wide binding of transcription factors in a particular cell type or under a particular condition is necessary for understanding transcri...
Gabriel Cuellar-Partida, Fabian A. Buske, Robert C...
GCB
2004
Springer
113views Biometrics» more  GCB 2004»
14 years 15 days ago
Feature Based Representation and Detection of Transcription Factor Binding Sites
: The prediction of transcription factor binding sites is an important problem, since it reveals information about the transcriptional regulation of genes. A commonly used represen...
Rainer Pudimat, Ernst Günter Schukat-Talamazz...
BMCBI
2006
64views more  BMCBI 2006»
13 years 7 months ago
In silico modelling of hormone response elements
Background: An important step in understanding the conditions that specify gene expression is the recognition of gene regulatory elements. Due to high diversity of different types...
Maria Stepanova, Feng Lin, Valerie C.-L. Lin
ALMOB
2006
86views more  ALMOB 2006»
13 years 7 months ago
Analysis of computational approaches for motif discovery
Recently, we performed an assessment of 13 popular computational tools for discovery of transcription factor binding sites (M. Tompa, N. Li, et al., "Assessing Computational ...
Nan Li, Martin Tompa
BMCBI
2010
108views more  BMCBI 2010»
13 years 7 months ago
An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs
Background: Transcription factors (TFs) control transcription by binding to specific regions of DNA called transcription factor binding sites (TFBSs). The identification of TFBSs ...
Fernando Garcia-Alcalde, Armando Blanco, Adrian J....