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» Indexing and Retrieval for Genomic Databases
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BMCBI
2006
116views more  BMCBI 2006»
13 years 7 months ago
MICA: desktop software for comprehensive searching of DNA databases
Background: Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegener...
William A. Stokes, Benjamin S. Glick
BMCBI
2006
129views more  BMCBI 2006»
13 years 7 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
DEXA
1998
Springer
140views Database» more  DEXA 1998»
13 years 11 months ago
An Analytical Study of Object Identifier Indexing
The object identifier index of an object-oriented database system is typically 20% of the size of the database itself, and for large databases, only a small part of the index fits...
Kjetil Nørvåg, Kjell Bratbergsengen
RECOMB
2009
Springer
14 years 8 months ago
Storage and Retrieval of Individual Genomes
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...
Gonzalo Navarro, Jouni Sirén, Niko Väl...
MLDM
1999
Springer
13 years 11 months ago
Non-hierarchical Clustering with Rival Penalized Competitive Learning for Information Retrieval
In large content-based image database applications, e cient information retrieval depends heavily on good indexing structures of the extracted features. While indexing techniques f...
Irwin King, Tak-Kan Lau