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» Inference of Isoforms from Short Sequence Reads
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RECOMB
2010
Springer
14 years 3 months ago
Inference of Isoforms from Short Sequence Reads
Jianxing Feng, Wei Li, Tao Jiang
WABI
2010
Springer
177views Bioinformatics» more  WABI 2010»
13 years 6 months ago
Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data
In this paper we present a novel expectation-maximization algorithm for inference of alternative splicing isoform frequencies from high-throughput transcriptome sequencing (RNA-Seq...
Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Al...
BMCBI
2006
143views more  BMCBI 2006»
13 years 8 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...
NAR
2011
223views Computer Vision» more  NAR 2011»
12 years 11 months ago
miRBase: integrating microRNA annotation and deep-sequencing data
miRBase is the primary online repository for all microRNA sequences and annotation. The current release (miRBase 16) contains over 15 000 microRNA gene loci in over 140 species, a...
Ana Kozomara, Sam Griffiths-Jones