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» Inference of Isoforms from Short Sequence Reads
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BMCBI
2011
13 years 4 days ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
BMCBI
2008
104views more  BMCBI 2008»
13 years 8 months ago
Comparison of methods for estimating the nucleotide substitution matrix
Background: The nucleotide substitution rate matrix is a key parameter of molecular evolution. Several methods for inferring this parameter have been proposed, with different math...
Maribeth Oscamou, Daniel McDonald, Von Bing Yap, G...
ICASSP
2008
IEEE
14 years 3 months ago
A factorization method in stereo motion for non-rigid objects
In this paper we propose a framework of factorization-based non-rigid shape modeling and tracking in stereo-motion. We construct a measurement matrix with the stereo-motion data c...
Yu Huang, Jilin Tu, Thomas S. Huang
CSB
2005
IEEE
189views Bioinformatics» more  CSB 2005»
14 years 2 months ago
Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks
We developed a machine learning system for determining gene functions from heterogeneous sources of data sets using a Weighted Naive Bayesian Network (WNB). The knowledge of gene ...
Xutao Deng, Huimin Geng, Hesham H. Ali
BMCBI
2006
156views more  BMCBI 2006»
13 years 8 months ago
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
Background: Molecular evolutionary studies of noncoding sequences rely on multiple alignments. Yet how multiple alignment accuracy varies across sequence types, tree topologies, d...
Daniel A. Pollard, Alan M. Moses, Venky N. Iyer, M...