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BMCBI
2010
142views more  BMCBI 2010»
13 years 10 months ago
Discover Protein Complexes in Protein-Protein Interaction Networks Using Parametric Local Modularity
Background: Recent advances in proteomic technologies have enabled us to create detailed protein-protein interaction maps in multiple species and in both normal and diseased cells...
Jongkwang Kim, Kai Tan
BMCBI
2006
127views more  BMCBI 2006»
13 years 10 months ago
Using local gene expression similarities to discover regulatory binding site modules
Background: We present an approach designed to identify gene regulation patterns using sequence and expression data collected for Saccharomyces cerevisae. Our main goal is to rela...
Bartek Wilczynski, Torgeir R. Hvidsten, Andriy Kry...
ISCA
2007
IEEE
196views Hardware» more  ISCA 2007»
14 years 4 months ago
Anton, a special-purpose machine for molecular dynamics simulation
The ability to perform long, accurate molecular dynamics (MD) simulations involving proteins and other biological macromolecules could in principle provide answers to some of the ...
David E. Shaw, Martin M. Deneroff, Ron O. Dror, Je...
NAR
2011
190views Computer Vision» more  NAR 2011»
13 years 20 days ago
New tools and methods for direct programmatic access to the dbSNP relational database
Genome-wide association studies often incorporate information from public biological databases in order to provide a biological reference for interpreting the results. The dbSNP d...
Scott F. Saccone, Jiaxi Quan, Gaurang Mehta, Rapha...
ESWS
2005
Springer
14 years 3 months ago
Web Explanations for Semantic Heterogeneity Discovery
Managing semantic heterogeneity is a complex task. One solution involves matching like terms to each other. We view Match as an operator that takes two graph-like structures (e.g....
Pavel Shvaiko, Fausto Giunchiglia, Paulo Pinheiro ...