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» Inferring Phylogenetic Trees Using Answer Set Programming
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CORR
2010
Springer
68views Education» more  CORR 2010»
13 years 8 months ago
An Optimization for Reasoning with Forest Logic Programs
Open Answer Set Programming (OASP) is an attractive framework for integrating ontologies and rules. In general OASP is undecidable. In previous work we provided a tableau-based alg...
Cristina Feier, Stijn Heymans
PODS
2010
ACM
170views Database» more  PODS 2010»
14 years 1 months ago
A learning algorithm for top-down XML transformations
A generalization from string to trees and from languages to translations is given of the classical result that any regular language can be learned from examples: it is shown that ...
Aurélien Lemay, Sebastian Maneth, Joachim N...
BIBE
2006
IEEE
119views Bioinformatics» more  BIBE 2006»
14 years 2 months ago
Large Grain Size Stochastic Optimization Alignment
DNA sequence alignment is a critical step in identifying homology between organisms. The most widely used alignment program, ClustalW, is known to suffer from the local minima pro...
Perry Ridge, Hyrum Carroll, Dan Sneddon, Mark J. C...
CEC
2011
IEEE
12 years 8 months ago
Cost-benefit analysis of using heuristics in ACGP
—Constrained Genetic Programming (CGP) is a method of searching the Genetic Programming search space non-uniformly, giving preferences to certain subspaces according to some heur...
John W. Aleshunas, Cezary Z. Janikow
RECOMB
2007
Springer
14 years 8 months ago
Minimizing and Learning Energy Functions for Side-Chain Prediction
Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
Chen Yanover, Ora Schueler-Furman, Yair Weiss