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» Inferring Phylogenetic Trees Using Answer Set Programming
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IPPS
2003
IEEE
14 years 1 months ago
Phylogenetic Tree Inference on PC Architectures with AxML/PAxML
Inference of phylogenetic trees comprising hundreds or even thousands of organisms based on the maximum likelihood method is computationally extremely expensive. In previous work,...
Alexandros Stamatakis, Thomas Ludwig 0002
APBC
2004
132views Bioinformatics» more  APBC 2004»
13 years 9 months ago
Identifying Character Non-Independence in Phylogenetic Data Using Data Mining Techniques
Undiscovered relationships in a data set may confound analyses, particularly those that assume data independence. Such problems occur when characters used for phylogenetic analyse...
Anne M. Maglia, Jennifer L. Leopold, Venkat Ram Gh...
LPNMR
2009
Springer
14 years 15 days ago
HAPLO-ASP: Haplotype Inference Using Answer Set Programming
Identifying maternal and paternal inheritance is essential to be able to find the set of genes responsible for a particular disease. However, due to technological limitations, we ...
Esra Erdem, Ozan Erdem, Ferhan Türe
BICOB
2009
Springer
14 years 2 months ago
A Fitness Distance Correlation Measure for Evolutionary Trees
Phylogenetics is concerned with inferring the genealogical relationships between a group of organisms (or taxa), and this relationship is usually expressed as an evolutionary tree....
Hyun Jung Park, Tiffani L. Williams
IPPS
2009
IEEE
14 years 2 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...