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» Inferring Phylogenetic Trees Using Answer Set Programming
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ENC
2005
IEEE
14 years 1 months ago
Inferring acceptable arguments with Answer Set Programming
Following the argumentation framework and semantics proposed by Dung, we are interested in the problem of deciding which set of acceptable arguments support the decision making in...
Mauricio Osorio, Claudia Zepeda, Juan Carlos Nieve...
AAAI
2008
13 years 10 months ago
Efficient Haplotype Inference with Answer Set Programming
Identifying maternal and paternal inheritance is essential to be able to find the set of genes responsible for a particular disease. Although we have access to genotype data (gene...
Esra Erdem, Ferhan Türe
ISMB
1998
13 years 9 months ago
Phylogenetic Inference in Protein Superfamilies: Analysis of SH2 Domains
This workfocuses on the inference of evolutionary relationships in protein superfamilies, and the uses of these relationships to identify keypositions in the structure, to infer a...
Kimmen Sjölander
BMCBI
2008
107views more  BMCBI 2008»
13 years 8 months ago
Extended Newick: it is time for a standard representation of phylogenetic networks
Background: Phylogenetic trees resulting from molecular phylogenetic analysis are available in Newick format from specialized databases but when it comes to phylogenetic networks,...
Gabriel Cardona, Francesc Rosselló, Gabriel...
BMCBI
2002
126views more  BMCBI 2002»
13 years 7 months ago
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
Background: When analyzing protein sequences using sequence similarity searches, orthologous sequences (that diverged by speciation) are more reliable predictors of a new protein&...
Christian M. Zmasek, Sean R. Eddy