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» Inferring Regulatory Systems with Noisy Pathway Information
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CANDC
2004
ACM
13 years 7 months ago
The iProClass integrated database for protein functional analysis
Increasingly, scientists have begun to tackle gene functions and other complex regulatory processes by studying organisms at the global scales for various levels of biological org...
Cathy H. Wu, Hongzhan Huang, Anastasia N. Nikolska...
BMCBI
2007
165views more  BMCBI 2007»
13 years 8 months ago
Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
Background: Manual curation of biological databases, an expensive and labor-intensive process, is essential for high quality integrated data. In this paper we report the implement...
Carlos Rodríguez Penagos, Heladia Salgado, ...
ICDE
2011
IEEE
281views Database» more  ICDE 2011»
12 years 11 months ago
Declarative analysis of noisy information networks
—There is a growing interest in methods for analyzing data describing networks of all types, including information, biological, physical, and social networks. Typically the data ...
Walaa Eldin Moustafa, Galileo Namata, Amol Deshpan...
BMCBI
2008
118views more  BMCBI 2008»
13 years 8 months ago
Inferring transcriptional compensation interactions in yeast via stepwise structure equation modeling
Background: With the abundant information produced by microarray technology, various approaches have been proposed to infer transcriptional regulatory networks. However, few appro...
Grace S. Shieh, Chung-Ming Chen, Ching-Yun Yu, Jui...
BIOCOMP
2006
13 years 9 months ago
Theoretical Bounds for the Number of Inferable Edges in Sparse Random Networks
Abstract-- The inference of a network structure from experimental data providing dynamical information about the underlying system of investigation is an important and still outsta...
Frank Emmert-Streib, Matthias Dehmer