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» Inferring differentiation pathways from gene expression
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PSB
2004
13 years 10 months ago
Modeling Cellular Processes with Variational Bayesian Cooperative Vector Quantizer
Gene expression of a cell is controlled by sophisticated cellular processes. The capability of inferring the states of these cellular processes would provide insight into the mech...
Xinghua Lu, Milos Hauskrecht, Roger S. Day
BMCBI
2005
169views more  BMCBI 2005»
13 years 8 months ago
An adaptive method for cDNA microarray normalization
Background: Normalization is a critical step in analysis of gene expression profiles. For duallabeled arrays, global normalization assumes that the majority of the genes on the ar...
Yingdong Zhao, Ming-Chung Li, Richard Simon
BMCBI
2007
109views more  BMCBI 2007»
13 years 8 months ago
Discarding duplicate ditags in LongSAGE analysis may introduce significant error
Background: During gene expression analysis by Serial Analysis of Gene Expression (SAGE), duplicate ditags are routinely removed from the data analysis, because they are suspected...
Jeppe Emmersen, Anna M. Heidenblut, Annabeth Laurs...
APBC
2003
13 years 10 months ago
Microarray Image Processing Based on Clustering and Morphological Analysis
Microarrays allow the monitoring of expressions for tens of thousands of genes simultaneously. Image analysis is an important aspect for microarray experiments that can affect sub...
Shuanhu Wu, Hong Yan
BMCBI
2007
145views more  BMCBI 2007»
13 years 8 months ago
The utility of MAS5 expression summary and detection call algorithms
Background: Used alone, the MAS5.0 algorithm for generating expression summaries has been criticized for high False Positive rates resulting from exaggerated variance at low inten...
Stuart D. Pepper, Emma K. Saunders, Laura E. Edwar...