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» Information extraction from biomedical text
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ACL
2004
13 years 9 months ago
Extracting Regulatory Gene Expression Networks From Pubmed
We present an approach using syntactosemantic rules for the extraction of relational information from biomedical abstracts. The results show that by overcoming the hurdle of techn...
Jasmin Saric, Lars Juhl Jensen, Peer Bork, Rossitz...
IPM
2007
123views more  IPM 2007»
13 years 7 months ago
Generating gene summaries from biomedical literature: A study of semi-structured summarization
Most knowledge accumulated through scientific discoveries in genomics and related biomedical disciplines is buried in the vast amount of biomedical literature. Since understandin...
Xu Ling, Jing Jiang, Xin He, Qiaozhu Mei, Chengxia...
BMCBI
2008
139views more  BMCBI 2008»
13 years 7 months ago
Abbreviation definition identification based on automatic precision estimates
Background: The rapid growth of biomedical literature presents challenges for automatic text processing, and one of the challenges is abbreviation identification. The presence of ...
Sunghwan Sohn, Donald C. Comeau, Won Kim, W. John ...
JCDL
2004
ACM
103views Education» more  JCDL 2004»
14 years 29 days ago
Integration of biomedical text and sequence OAI repositories
Archived biomedical literature and sequence data are growing rapidly. The Open Archives Initiative's Protocol for Metadata Harvesting (OAI-PMH) [1] provides a convenient way ...
Yueyu Fu, Javed Mostafa
BMCBI
2005
151views more  BMCBI 2005»
13 years 7 months ago
ProMiner: rule-based protein and gene entity recognition
Background: Identification of gene and protein names in biomedical text is a challenging task as the corresponding nomenclature has evolved over time. This has led to multiple syn...
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevis...